plotGrouper

DOI: 10.18129/B9.bioc.plotGrouper    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see plotGrouper.

Shiny app GUI wrapper for ggplot with built-in statistical analysis

Bioconductor version: 3.9

A shiny app-based GUI wrapper for ggplot with built-in statistical analysis. Import data from file and use dropdown menus and checkboxes to specify the plotting variables, graph type, and look of your plots. Once created, plots can be saved independently or stored in a report that can be saved as a pdf. If new data are added to the file, the report can be refreshed to include new data. Statistical tests can be selected and added to the graphs. Analysis of flow cytometry data is especially integrated with plotGrouper. Count data can be transformed to return the absolute number of cells in a sample (this feature requires inclusion of the number of beads per sample and information about any dilution performed).

Author: John D. Gagnon [aut, cre]

Maintainer: John D. Gagnon <john.gagnon.42 at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plotGrouper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plotGrouper")

 

HTML	R Script	plotGrouper
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, FlowCytometry, GUI, GraphAndNetwork, ImmunoOncology, MultipleComparison, Software, StatisticalMethod
Version	1.2.0
In Bioconductor since	BioC 3.8 (R-3.5) (1 year)
License	GPL-3
Depends	R (>= 3.5)
Imports	ggplot2 (>= 3.0.0), dplyr (>= 0.7.6), tidyr (>= 0.2.0), tibble (>= 1.4.2), stringr (>= 1.3.1), readr (>= 1.1.1), readxl (>= 1.1.0), scales (>= 1.0.0), stats, grid, gridExtra (>= 2.3), egg (>= 0.4.0), gtable (>= 0.2.0), ggpubr (>= 0.1.8), shiny (>= 1.1.0), shinythemes (>= 1.1.1), colourpicker (>= 1.0), magrittr (>= 1.5), Hmisc (>= 4.1.1), rlang (>= 0.2.2)
LinkingTo
Suggests	knitr, htmltools, BiocStyle, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://jdgagnon.github.io/plotGrouper/
BugReports	https://github.com/jdgagnon/plotGrouper/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	plotGrouper_1.2.0.tar.gz
Windows Binary	plotGrouper_1.2.0.zip
Mac OS X 10.11 (El Capitan)	plotGrouper_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/plotGrouper
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plotGrouper
Package Short Url	https://bioconductor.org/packages/plotGrouper/
Package Downloads Report	Download Stats