psygenet2r

DOI: 10.18129/B9.bioc.psygenet2r    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see psygenet2r.

psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders

Bioconductor version: 3.9

Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

Author: Alba Gutierrez-Sacristan [aut, cre], Carles Hernandez-Ferrer [aut], Jaun R. Gonzalez [aut], Laura I. Furlong [aut]

Maintainer: Alba Gutierrez-Sacristan <alba.gutierrez at upf.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("psygenet2r")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("psygenet2r")

 

HTML	R Script	psygenet2r: An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
HTML	R Script	psygenet2r: Case study on GWAS on bipolar disorder
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	BiomedicalInformatics, DataImport, DataRepresentation, Genetics, Infrastructure, Software
Version	1.16.0
In Bioconductor since	BioC 3.3 (R-3.3) (3.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.4)
Imports	stringr, RCurl, igraph, ggplot2, reshape2, grid, parallel, biomaRt, BgeeDB, topGO, BiocManager, Biobase, labeling, GO.db
LinkingTo
Suggests	testthat, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	psygenet2r_1.16.0.tar.gz
Windows Binary	psygenet2r_1.16.0.zip
Mac OS X 10.11 (El Capitan)	psygenet2r_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/psygenet2r
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/psygenet2r
Package Short Url	https://bioconductor.org/packages/psygenet2r/
Package Downloads Report	Download Stats