qcmetrics

DOI: 10.18129/B9.bioc.qcmetrics    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see qcmetrics.

A Framework for Quality Control

Bioconductor version: 3.9

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qcmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qcmetrics")

 

HTML	R Script	Index file for the qcmetrics package vignette
PDF	R Script	The 'qcmetrics' infrastructure for quality control and reporting
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version	1.22.0
In Bioconductor since	BioC 2.13 (R-3.0) (6 years)
License	GPL-2
Depends	R (>= 3.3)
Imports	Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander, S4Vectors
LinkingTo
Suggests	affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/lgatto/qcmetrics
BugReports	https://github.com/lgatto/qcmetrics/issues
Depends On Me
Imports Me	MSstatsQC
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	qcmetrics_1.22.0.tar.gz
Windows Binary	qcmetrics_1.22.0.zip
Mac OS X 10.11 (El Capitan)	qcmetrics_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qcmetrics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qcmetrics
Package Short Url	https://bioconductor.org/packages/qcmetrics/
Package Downloads Report	Download Stats