scsR

DOI: 10.18129/B9.bioc.scsR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see scsR.

SiRNA correction for seed mediated off-target effect

Bioconductor version: 3.9

Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.

Author: Andrea Franceschini

Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Roger Meier <roger.meier at lmsc.ethz.ch>, Christian von Mering <mering at imls.uzh.ch>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scsR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scsR")

 

PDF	R Script	scsR Vignette
PDF		Reference Manual

Details

biocViews	Preprocessing, Software
Version	1.20.0
In Bioconductor since	BioC 2.14 (R-3.1) (5.5 years)
License	GPL-2
Depends	R (>= 2.14.0), STRINGdb, methods, BiocGenerics, Biostrings, IRanges, plyr, tcltk
Imports	sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer
LinkingTo
Suggests	RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scsR_1.20.0.tar.gz
Windows Binary	scsR_1.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	scsR_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/scsR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scsR
Package Short Url	https://bioconductor.org/packages/scsR/
Package Downloads Report	Download Stats