sights

DOI: 10.18129/B9.bioc.sights    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see sights.

Statistics and dIagnostic Graphs for HTS

Bioconductor version: 3.9

SIGHTS is a suite of normalization methods, statistical tests, and diagnostic graphical tools for high throughput screening (HTS) assays. HTS assays use microtitre plates to screen large libraries of compounds for their biological, chemical, or biochemical activity.

Author: Elika Garg [aut, cre], Carl Murie [aut], Heydar Ensha [ctb], Robert Nadon [aut]

Maintainer: Elika Garg <elika.garg at mail.mcgill.ca>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sights")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sights")

 

HTML	R Script	Using **SIGHTS** R-package
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	BatchEffect, CellBasedAssays, ImmunoOncology, MicrotitrePlateAssay, MultipleComparison, Normalization, Preprocessing, QualityControl, Software, Visualization
Version	1.10.0
In Bioconductor since	BioC 3.4 (R-3.3) (3 years)
License	GPL-3 | file LICENSE
Depends	R (>= 3.3)
Imports	MASS (>= 7.3), qvalue(>= 2.2), ggplot2 (>= 2.0), reshape2 (>= 1.4), lattice (>= 0.2), stats (>= 3.3)
LinkingTo
Suggests	testthat, knitr, rmarkdown, ggthemes, gridExtra, xlsx
SystemRequirements
Enhances
URL	https://eg-r.github.io/sights/
BugReports	https://github.com/eg-r/sights/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sights_1.10.0.tar.gz
Windows Binary	sights_1.10.0.zip
Mac OS X 10.11 (El Capitan)	sights_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sights
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sights
Package Short Url	https://bioconductor.org/packages/sights/
Package Downloads Report	Download Stats