ssviz

DOI: 10.18129/B9.bioc.ssviz    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ssviz.

A small RNA-seq visualizer and analysis toolkit

Bioconductor version: 3.9

Small RNA sequencing viewer

Author: Diana Low

Maintainer: Diana Low <lowdiana at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ssviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ssviz")

 

PDF	R Script	ssviz
PDF		Reference Manual
Text		NEWS

Details

biocViews	Genetics, ImmunoOncology, MultipleComparison, RNASeq, Sequencing, Software, Visualization
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (5 years)
License	GPL-2
Depends	R (>= 2.15.1), methods, Rsamtools, Biostrings, reshape, ggplot2, RColorBrewer, stats
Imports
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ssviz_1.18.0.tar.gz
Windows Binary	ssviz_1.18.0.zip
Mac OS X 10.11 (El Capitan)	ssviz_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ssviz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ssviz
Package Short Url	https://bioconductor.org/packages/ssviz/
Package Downloads Report	Download Stats