survcomp

DOI: 10.18129/B9.bioc.survcomp    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see survcomp.

Performance Assessment and Comparison for Survival Analysis

Bioconductor version: 3.9

Assessment and Comparison for Performance of Risk Prediction (Survival) Models.

Author: Benjamin Haibe-Kains, Markus Schroeder, Catharina Olsen, Christos Sotiriou, Gianluca Bontempi, John Quackenbush, Samuel Branders, Zhaleh Safikhani

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>, Markus Schroeder <markus.schroeder at ucdconnect.ie>, Catharina Olsen <colsen at ulb.ac.be>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("survcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("survcomp")

 

PDF	R Script	SurvComp: a package for performance assessment and comparison for survival analysis
PDF		Reference Manual

Details

biocViews	DifferentialExpression, GeneExpression, Software, Visualization
Version	1.34.0
In Bioconductor since	BioC 2.8 (R-2.13) (8.5 years)
License	Artistic-2.0
Depends	survival, prodlim, R (>= 3.4)
Imports	ipred, SuppDists, KernSmooth, survivalROC, bootstrap, grid, rmeta, stats, graphics
LinkingTo
Suggests	Hmisc, CPE, clinfun, xtable, Biobase, BiocManager
SystemRequirements
Enhances
URL	http://www.pmgenomics.ca/bhklab/
Depends On Me	genefu
Imports Me	GenRank
Suggests Me	breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, glmSparseNet, metaseqR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	survcomp_1.34.0.tar.gz
Windows Binary	survcomp_1.34.0.zip
Mac OS X 10.11 (El Capitan)	survcomp_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/survcomp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/survcomp
Package Short Url	https://bioconductor.org/packages/survcomp/
Package Downloads Report	Download Stats