tenXplore

DOI: 10.18129/B9.bioc.tenXplore    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see tenXplore.

ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Bioconductor version: 3.9

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tenXplore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tenXplore")

 

PDF	R Script	tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons
PDF		Reference Manual

Details

biocViews	DimensionReduction, ImmunoOncology, PrincipalComponent, SingleCell, Software, Transcriptomics
Version	1.6.0
In Bioconductor since	BioC 3.6 (R-3.4) (2 years)
License	Artistic-2.0
Depends	R (>= 3.4), shiny, restfulSE(>= 0.99.12)
Imports	methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils
LinkingTo
Suggests	org.Hs.eg.db, testthat, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tenXplore_1.6.0.tar.gz
Windows Binary	tenXplore_1.6.0.zip
Mac OS X 10.11 (El Capitan)	tenXplore_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tenXplore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tenXplore
Package Short Url	https://bioconductor.org/packages/tenXplore/
Package Downloads Report	Download Stats