AssessORFData

DOI: 10.18129/B9.bioc.AssessORFData    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see AssessORFData.

Data and Files for the AssessORF Package

Bioconductor version: 3.9

This package provides access to mapping and results objects generated by the AssessORF package, as well as the genome sequences for the strains corresponding to those objects.

Author: Deepank Korandla [aut, cre]

Maintainer: Deepank Korandla <dkorandl at andrew.cmu.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AssessORFData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AssessORFData")

 

PDF	R Script	Using AssessORFData
PDF		Reference Manual

Details

biocViews	Bacillus_subtilis_Data, Escherichia_coli_Data, ExperimentData, Genome, OrganismData, Proteome, Pseudomonas_aeruginosa_Data, SequencingData, Staphylococcus_aureus_Data
Version	1.2.0
License	GPL-3
Depends	R (>= 3.5.0)
Imports	DECIPHER, utils
LinkingTo
Suggests	AssessORF, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	AssessORF
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AssessORFData_1.2.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/AssessORFData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AssessORFData
Package Short Url	https://bioconductor.org/packages/AssessORFData/
Package Downloads Report	Download Stats