FunciSNP.data

DOI: 10.18129/B9.bioc.FunciSNP.data    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see FunciSNP.data.

Various data sets for use with the FunciSNP package

Bioconductor version: 3.9

Data sets needed for FunciSNP to integrate information from GWAS, 1000genomes and chromatin feature, in order to identify functional SNP in coding or non-coding regions.

Author: Simon G. Coetzee <simon at simoncoetzee.com> and Houtan Noushmehr, PhD <houtan at usp.br>

Maintainer: Simon G. Coetzee <scoetzee at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FunciSNP.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FunciSNP.data")

 

PDF	R Script	FunciSNP Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	ENCODE, ExperimentData, Project1000genomes, SNPData
Version	1.20.0
License	GPL-3
Depends	R (>= 2.14.0), IRanges
Imports	rtracklayer
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/
Depends On Me	FunciSNP
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	FunciSNP.data_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/FunciSNP.data
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/FunciSNP.data
Package Short Url	https://bioconductor.org/packages/FunciSNP.data/
Package Downloads Report	Download Stats