This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see HD2013SGI.
Bioconductor version: 3.9
This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.
Author: Bernd Fischer
Maintainer: Bernd Fischer <b.fischer at dkfz.de>
Citation (from within R,
enter citation("HD2013SGI")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("HD2013SGI")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HD2013SGI")
R Script | HD2013SGI | |
Reference Manual |
biocViews | CancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData |
Version | 1.24.0 |
License | Artistic-2.0 |
Depends | R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage |
Imports | |
LinkingTo | |
Suggests | BiocStyle |
SystemRequirements | GNU make |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | HD2013SGI_1.24.0.tar.gz |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | |
Source Repository | git clone https://git.bioconductor.org/packages/HD2013SGI |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HD2013SGI |
Package Short Url | https://bioconductor.org/packages/HD2013SGI/ |
Package Downloads Report | Download Stats |
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