HD2013SGI

DOI: 10.18129/B9.bioc.HD2013SGI    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see HD2013SGI.

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Bioconductor version: 3.9

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

Author: Bernd Fischer

Maintainer: Bernd Fischer <b.fischer at dkfz.de>

Citation (from within R, enter citation("HD2013SGI")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HD2013SGI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HD2013SGI")

 

PDF R Script HD2013SGI
PDF   Reference Manual

Details

biocViews CancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData
Version 1.24.0
License Artistic-2.0
Depends R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage
Imports
LinkingTo
Suggests BiocStyle
SystemRequirements GNU make
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HD2013SGI_1.24.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HD2013SGI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HD2013SGI
Package Short Url https://bioconductor.org/packages/HD2013SGI/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: