LungCancerLines

DOI: 10.18129/B9.bioc.LungCancerLines    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see LungCancerLines.

Reads from Two Lung Cancer Cell Lines

Bioconductor version: 3.9

Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.

Author: Cory Barr, Michael Lawrence

Maintainer: Cory Barr <barr.cory at gene.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LungCancerLines")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CancerData, ExperimentData, Genome, LungCancerData, RNASeqData
Version	0.22.0
License	Artistic-2.0
Depends
Imports	Rsamtools
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	gmapR, HTSeqGenie, VariantTools
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LungCancerLines_0.22.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/LungCancerLines
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LungCancerLines
Package Short Url	https://bioconductor.org/packages/LungCancerLines/
Package Downloads Report	Download Stats