bodymapRat

DOI: 10.18129/B9.bioc.bodymapRat    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see bodymapRat.

Experimental dataset from the rat BodyMap project

Bioconductor version: 3.9

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

Author: Stephanie Hicks [aut, cre] , Kwame Okrah [aut]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bodymapRat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bodymapRat")

 

HTML	R Script	The bodymapRat data user's guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version	1.0.0
License	CC BY 4.0
Depends	R (>= 3.6.0), SummarizedExperiment, ExperimentHub
Imports	utils
LinkingTo
Suggests	knitr, BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	qsmooth
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bodymapRat_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/bodymapRat
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bodymapRat
Package Short Url	https://bioconductor.org/packages/bodymapRat/
Package Downloads Report	Download Stats