brainImageRdata

DOI: 10.18129/B9.bioc.brainImageRdata    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see brainImageRdata.

Image masks and expression data for use with BrainImageR

Bioconductor version: 3.9

brainImageRdata contains image masks for the developing human and the adult human brain. These masks can be used in conjunction with the gene expression data to generate spatial gene set enrichment plots. It also contains the expression data for the 15 pcw human brain, the adult human brain, and the developing human brain.

Author: Sara Linker

Maintainer: Sara Linker <slinker at salk.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("brainImageRdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("brainImageRdata")

 

HTML	R Script	brainImageRdata
PDF		Reference Manual

Details

biocViews	ExperimentData, ExpressionData, Homo_sapiens_Data, OrganismData
Version	1.2.0
License	CC BY-SA 4.0
Depends	ExperimentHub
Imports
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	brainImageRdata_1.2.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/brainImageRdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/brainImageRdata
Package Short Url	https://bioconductor.org/packages/brainImageRdata/
Package Downloads Report	Download Stats