gageData

DOI: 10.18129/B9.bioc.gageData    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see gageData.

Auxillary data for gage package

Bioconductor version: 3.9

This is a supportive data package for the software package, gage. However, the data supplied here are also useful for gene set or pathway analysis or microarray data analysis in general. In this package, we provide two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and BMP6 (originally published as an demo dataset for GAGE, also registered as GSE13604 in GEO). This package also includes commonly used gene set data based on KEGG pathways and GO terms for major research species, including human, mouse, rat and budding yeast. Mapping data between common gene IDs for budding yeast are also included.

Author: Weijun Luo

Maintainer: Weijun Luo <luo_weijun at yahoo.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gageData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		NEWS

Details

biocViews	BreastCancerData, CancerData, ExperimentData, GEO, MicroarrayData, StemCell
Version	2.22.0
License	GPL (>=2.0)
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests	gage, pathview, genefilter
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	gage
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gageData_2.22.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/gageData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gageData
Package Short Url	https://bioconductor.org/packages/gageData/
Package Downloads Report	Download Stats