genomationData

DOI: 10.18129/B9.bioc.genomationData    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see genomationData.

Experimental data for showing functionalities of the genomation package

Bioconductor version: 3.9

The package contains Chip Seq, Methylation and Cage data, downloaded from Encode

Author: Altuna Akalin, Vedran Franke

Maintainer: Vedran Franke <vedran.franke at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("genomationData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genomationData")

 

PDF	R Script	genomationData
PDF		Reference Manual

Details

biocViews	ChIPSeqData, ChipOnChipData, ENCODE, ExperimentData, Genome, SequencingData, StemCell
Version	1.16.0
License	GPL-3
Depends
Imports
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	genomation
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	genomationData_1.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/genomationData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/genomationData
Package Short Url	https://bioconductor.org/packages/genomationData/
Package Downloads Report	Download Stats