shinyMethylData

DOI: 10.18129/B9.bioc.shinyMethylData    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see shinyMethylData.

Example dataset of input data for shinyMethyl

Bioconductor version: 3.9

Extracted data from 369 TCGA Head and Neck Cancer DNA methylation samples. The extracted data serve as an example dataset for the package shinyMethyl. Original samples are from 450k methylation arrays, and were obtained from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("shinyMethylData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CancerData, ExperimentData, Genome
Version	1.4.0
License	Artistic-2.0
Depends	R (>= 3.0.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	shinyMethyl
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	shinyMethylData_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/shinyMethylData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/shinyMethylData
Package Short Url	https://bioconductor.org/packages/shinyMethylData/
Package Downloads Report	Download Stats