tissueTreg

DOI: 10.18129/B9.bioc.tissueTreg    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see tissueTreg.

TWGBS and RNA-seq data from tissue T regulatory cells from mice

Bioconductor version: 3.9

The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.

Author: Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]

Maintainer: Charles Imbusch <c.imbusch at dkfz.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tissueTreg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tissueTreg")

 

HTML	R Script	tissueTreg
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue
Version	1.4.0
License	GPL (>= 2)
Depends	R (>= 3.5)
Imports
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment
SystemRequirements
Enhances
URL	https://github.com/cimbusch/tissueTreg
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tissueTreg_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/tissueTreg
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tissueTreg
Package Short Url	https://bioconductor.org/packages/tissueTreg/
Package Downloads Report	Download Stats