iSEEu

This is the development version of iSEEu; for the stable release version, see iSEEu.

iSEE Universe

Bioconductor version: Development (3.21)

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Author: Kevin Rue-Albrecht [aut, cre] (ORCID: ), Charlotte Soneson [aut] (ORCID: ), Federico Marini [aut] (ORCID: ), Aaron Lun [aut] (ORCID: ), Michael Stadler [ctb]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEu")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iSEEu")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEu")

Panel universe	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization
Version	1.19.0
In Bioconductor since	BioC 3.11 (R-4.0) (4.5 years)
License	MIT + file LICENSE
Depends	iSEE, iSEEhex
Imports	methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2 (>= 3.4.0), DT, stats, colourpicker, shinyAce
System Requirements
URL	https://github.com/iSEE/iSEEu
Bug Reports	https://github.com/iSEE/iSEEu/issues

Suggests	scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr
Linking To
Enhances
Depends On Me
Imports Me	iSEEfier
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iSEEu_1.19.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/iSEEu
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iSEEu
Bioc Package Browser	https://code.bioconductor.org/browse/iSEEu/
Package Short Url	https://bioconductor.org/packages/iSEEu/
Package Downloads Report	Download Stats