To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeSousa2013")

In most cases, you don't need to download the package archive at all.

DeSousa2013

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see DeSousa2013.

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Bioconductor version: 3.0

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Citation (from within R, enter citation("DeSousa2013")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeSousa2013")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeSousa2013")

PDF	R Script	Main vignette:Poor prognosis colon cancer is defined by a molecular distinct subtype and develops from serrated precursor lesions
PDF		Reference Manual

biocViews	Bioinformatics, ExperimentData
Version	1.1.1
License	Artistic-2.0
Depends	R (>= 2.15)
Imports	affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase
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Follow Installation instructions to use this package in your R session.

Package Source	DeSousa2013_1.1.1.tar.gz
Windows Binary	DeSousa2013_1.1.1.zip
Mac OS X 10.6 (Snow Leopard)	DeSousa2013_1.1.1.tgz
Mac OS X 10.9 (Mavericks)	DeSousa2013_1.1.1.tgz
Subversion source	(username/password: readonly)
Package Short Url	http://bioconductor.org/packages/DeSousa2013/
Package Downloads Report	Download Stats

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