BSgenome.Hsapiens.UCSC.hg38

DOI: 10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg38    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg38.

Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p13)

Bioconductor version: 3.15

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p13) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	1.4.4
License	Artistic-2.0
Depends	R (>= 3.5.0), BSgenome(>= 1.60.0)
Imports	BSgenome
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	BSgenome.Hsapiens.UCSC.hg38.masked
Imports Me	branchpointer, BSgenome.Hsapiens.UCSC.hg38.masked, musicatk, ORFhunteR, primirTSS, trena, uncoverappLib
Suggests Me	BSgenome, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, bsseq, BUSpaRse, ChIPpeakAnno, circRNAprofiler, CNEr, crisprBowtie, crisprBwa, eisaR, enhancerHomologSearch, EpiTxDb, GenVisR, GRaNIE, HiCDCPlus, MethReg, Motif2Site, multicrispr, periodicDNA, pqsfinder, REMP, scanMiRApp, SCOPE, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP151.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh38, supersigs, TAPseq, Ularcirc, XNAString, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg38_1.4.4.tar.gz
Windows Binary
macOS Binary (x86_64)
Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/
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