SNPlocs.Hsapiens.dbSNP155.GRCh38

DOI: 10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP155.GRCh38    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP155.GRCh38.

SNP locations and alleles for Homo sapiens (dbSNP Human Build 155)

Bioconductor version: 3.15

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 155. The 948,979,291 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/latest_release/JSON/ (these files were created by NCBI on May 25, 2021). These SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version	0.99.21
License	Artistic-2.0
Depends	R (>= 4.2.0), BSgenome
Imports	methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests	Biostrings, BSgenome.Hsapiens.UCSC.hg38
SystemRequirements
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SNPlocs.Hsapiens.dbSNP155.GRCh38_0.99.21.tar.gz
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Package Short Url	https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP155.GRCh38/
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