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- CNORfeeder
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNORfeeder")
In most cases, you don't need to download the package archive at all.
CNORfeeder
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Integration of CellNOptR to add missing links
Bioconductor version: Release (3.5)
This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.
Author: F.Eduati
Maintainer: F.Eduati <eduati at ebi.ac.uk>
Citation (from within R,
enter citation("CNORfeeder")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNORfeeder")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CNORfeeder")
| R Script | Main vignette:Playing with networks using CNORfeeder | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bioinformatics, CellBasedAssays, CellBiology, NetworkInference, Proteomics, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (4.5 years) |
| License | GPL-3 |
| Depends | R (>= 2.15.0), CellNOptR(>= 1.4.0), graph |
| Imports | |
| LinkingTo | |
| Suggests | minet, catnet, Rgraphviz, RUnit, BiocGenerics, igraph |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CNORfeeder_1.16.0.tar.gz |
| Windows Binary | CNORfeeder_1.16.0.zip |
| Mac OS X 10.11 (El Capitan) | CNORfeeder_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CNORfeeder |
| Package Short Url | http://bioconductor.org/packages/CNORfeeder/ |
| Package Downloads Report | Download Stats |
Documentation »
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