S4 generic functions needed by many Bioconductor packages.
| biocViews |
Infrastructure, Software |
| Version |
0.22.1 |
| In Bioconductor since |
BioC 2.10 (R-2.15) (5.5 years) |
| License |
Artistic-2.0 |
| Depends |
methods, utils, graphics, stats, parallel |
| Imports |
methods, utils, graphics, stats, parallel |
| LinkingTo |
|
| Suggests |
Biobase, S4Vectors, IRanges, GenomicRanges, AnnotationDbi, oligoClasses, oligo, affyPLM, flowClust, affy, DESeq2, MSnbase, annotate, RUnit |
| SystemRequirements |
|
| Enhances |
|
| URL |
|
| Depends On Me |
ACME, affy, affyPLM, altcdfenvs, AnnotationDbi, AnnotationForge, AnnotationHub, ATACseqQC, beadarray, bioassayR, Biobase, Biostrings, BSgenome, bsseq, Cardinal, Category, categoryCompare, ChAMPdata, chipseq, ChIPseqR, ChromHeatMap, cleanUpdTSeq, codelink, consensusSeekeR, copynumber, CRISPRseek, cummeRbund, DelayedArray, DESeq, dexus, ensembldb, ensemblVEP, ExperimentHub, ExperimentHubData, FEM, flowQ, geneplotter, GenomeInfoDb, genomeIntervals, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicRanges, GenomicScores, Genominator, genoset, ggbio, girafe, graph, GRridge, GSEABase, GUIDEseq, HelloRanges, htSeqTools, interactiveDisplay, interactiveDisplayBase, IRanges, MBASED, MeSHDbi, meshr, methyAnalysis, MIGSA, MineICA, minfi, MLInterfaces, MotifDb, MotIV, MSnbase, multtest, NADfinder, oligo, OrganismDbi, pandaR, Pbase, PICS, plethy, PSICQUIC, PWMEnrich, RareVariantVis, REDseq, Repitools, rMAT, RNAprobR, RnBeads, RPA, rsbml, S4Vectors, scsR, shinyMethyl, ShortRead, simpleaffy, simulatorZ, soGGi, TEQC, tigre, topGO, UNDO, UniProt.ws, VanillaICE, VariantAnnotation, VariantFiltering, XVector, yamss |
| Imports Me |
affycoretools, affylmGUI, AllelicImbalance, AneuFinder, annmap, annotate, AnnotationDbi, AnnotationHubData, ArrayExpressHTS, ASpli, bamsignals, biocGraph, biosvd, biovizBase, BiSeq, blima, BrowserViz, BrowserVizDemo, BSgenome, BubbleTree, bumphunter, casper, cellHTS2, cgdv17, cghMCR, ChemmineDrugs, ChemmineOB, ChemmineR, ChIPComp, chipenrich, chipenrich.data, ChIPpeakAnno, ChIPQC, ChIPseeker, chipseq, clusterSeq, cn.mops, CNEr, CNPBayes, cobindR, compEpiTools, crlmm, crossmeta, csaw, cummeRbund, curatedCRCData, curatedOvarianData, ddCt, DESeq2, destiny, DEXSeq, diffHic, DirichletMultinomial, DOQTL, DRIMSeq, DrugVsDisease, easyRNASeq, EBImage, EDASeq, eiR, eisa, ELMER, epigenomix, epivizrStandalone, erma, FamAgg, fastseg, ffpe, FindMyFriends, flowBin, flowClust, flowCore, flowFP, flowQ, FlowSOM, flowStats, flowWorkspace, fmcsR, frma, FunciSNP, GA4GHclient, gcapc, gCMAPWeb, genbankr, geneAttribution, geneClassifiers, GENESIS, GenomicAlignments, GenomicInteractions, GenomicTuples, genotypeeval, GenVisR, GGBase, GGtools, goseq, GOTHiC, gQTLBase, gQTLstats, GSVA, Gviz, gwascat, HDF5Array, heatmaps, hiReadsProcessor, hopach, HTSeqGenie, IHW, IHWpaper, IMAS, INSPEcT, intansv, InteractionSet, IntEREst, IONiseR, isomiRs, IVAS, JunctionSeq, KCsmart, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, LOLA, LVSmiRNA, M3D, MAST, matter, MEAL, metaMS, MethylAid, methylPipe, methylumi, mimager, MinimumDistance, MiRaGE, mogsa, monocle, motifbreakR, msa, MultiAssayExperiment, MultiDataSet, MutationalPatterns, mzR, NarrowPeaks, ncdfFlow, npGSEA, nucleR, oligoClasses, parglms, pbcmc, pcaMethods, pdInfoBuilder, phyloseq, piano, PING, plrs, podkat, prada, ProCoNA, profileScoreDist, pRoloc, pwOmics, qsea, QuasR, R3CPET, R453Plus1Toolbox, RaggedExperiment, ramwas, RCAS, RCyjs, RCytoscape, recoup, REDseq, RefNet, REMP, ReportingTools, RGalaxy, RGSEA, RiboProfiling, Ringo, RJMCMCNucleosomes, rMAT, roar, Rqc, rqubic, Rsamtools, rsbml, rtracklayer, S4Vectors, scater, SGSeq, signeR, simpleaffy, SLGI, SNPhood, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, snpStats, spliceSites, SplicingGraphs, sscu, STAN, Streamer, SummarizedExperiment, systemPipeR, systemPipeRdata, TarSeqQC, TCseq, TFBSTools, transcriptR, TransView, triform, TSRchitect, TSSi, TVTB, unifiedWMWqPCR, uSORT, VariantTools, VariantToolsData, wavClusteR, xcms, XDE, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, XVector |
| Suggests Me |
acde, AIMS, ArrayTV, ASSET, BaalChIP, baySeq, bigmelon, bigmemoryExtras, BiocCheck, BiocInstaller, BiocParallel, BiocStyle, biocViews, BioMedR, biosigner, BiRewire, BLMA, CAFE, CAMERA, CancerSubtypes, CAnD, CausalR, ccrepe, CellNOptR, CexoR, ChIPXpress, CHRONOS, CINdex, clipper, clonotypeR, clustComp, CNORfeeder, CNORfuzzy, CNVPanelizer, coMET, ConnectivityMap, cosmiq, COSNet, cpvSNP, cydar, cytofkit, DAPAR, DBChIP, DEGreport, DEsubs, DMRcaller, DMRcate, ENCODExplorer, ENmix, epiNEM, EventPointer, fCCAC, FGNet, flowCL, flowQB, FlowRepositoryR, flowTime, focalCall, gCMAP, gCrisprTools, gdsfmt, GEM, GENE.E, GeneNetworkBuilder, GeneOverlap, geneplast, geneRxCluster, geNetClassifier, genomation, GEOquery, GMRP, GOstats, GraphPAC, GreyListChIP, grndata, GWASTools, h5vc, Harman, HarmanData, hiAnnotator, hierGWAS, hypergraph, iCARE, iClusterPlus, illuminaio, InPAS, INPower, IPO, kebabs, KEGGREST, ldblock, LINC, mAPKL, massiR, MatrixRider, MBttest, mdgsa, Mergeomics, MeSH.Aca.eg.db, MeSH.Aga.PEST.eg.db, MeSH.Ame.eg.db, MeSH.Aml.eg.db, MeSH.Ana.eg.db, MeSH.Ani.FGSC.eg.db, MeSH.AOR.db, MeSH.Ath.eg.db, MeSH.Atu.K84.eg.db, MeSH.Bfl.eg.db, MeSH.Bsu.168.eg.db, MeSH.Bsu.TUB10.eg.db, MeSH.Bta.eg.db, MeSH.Cal.SC5314.eg.db, MeSH.Cbr.eg.db, MeSH.Cel.eg.db, MeSH.Cfa.eg.db, MeSH.Cin.eg.db, MeSH.Cja.eg.db, MeSH.Cpo.eg.db, MeSH.Cre.eg.db, MeSH.Dan.eg.db, MeSH.db, MeSH.Dda.3937.eg.db, MeSH.Ddi.AX4.eg.db, MeSH.Der.eg.db, MeSH.Dgr.eg.db, MeSH.Dme.eg.db, MeSH.Dmo.eg.db, MeSH.Dpe.eg.db, MeSH.Dre.eg.db, MeSH.Dse.eg.db, MeSH.Dsi.eg.db, MeSH.Dvi.eg.db, MeSH.Dya.eg.db, MeSH.Eco.55989.eg.db, MeSH.Eco.ED1a.eg.db, MeSH.Eco.IAI39.eg.db, MeSH.Eco.K12.MG1655.eg.db, MeSH.Eco.O157.H7.Sakai.eg.db, MeSH.Eco.UMN026.eg.db, MeSH.Eqc.eg.db, MeSH.Gga.eg.db, MeSH.Gma.eg.db, MeSH.Hsa.eg.db, MeSH.Laf.eg.db, MeSH.Lma.eg.db, MeSH.Mdo.eg.db, MeSH.Mes.eg.db, MeSH.Mga.eg.db, MeSH.Miy.eg.db, MeSH.Mml.eg.db, MeSH.Mmu.eg.db, MeSH.Mtr.eg.db, MeSH.Nle.eg.db, MeSH.Oan.eg.db, MeSH.Ocu.eg.db, MeSH.Oni.eg.db, MeSH.Osa.eg.db, MeSH.Pab.eg.db, MeSH.Pae.PAO1.eg.db, MeSH.PCR.db, MeSH.Pfa.3D7.eg.db, MeSH.Pto.eg.db, MeSH.Ptr.eg.db, MeSH.Rno.eg.db, MeSH.Sce.S288c.eg.db, MeSH.Sco.A32.eg.db, MeSH.Sil.eg.db, MeSH.Spo.972h.eg.db, MeSH.Spu.eg.db, MeSH.Ssc.eg.db, MeSH.Syn.eg.db, MeSH.Tbr.9274.eg.db, MeSH.Tgo.ME49.eg.db, MeSH.Tgu.eg.db, MeSH.Vvi.eg.db, MeSH.Xla.eg.db, MeSH.Xtr.eg.db, MeSH.Zma.eg.db, Metab, MetaboSignal, metagene, metagenomeSeq, metaseqR, MetCirc, methylInheritance, MIGSAdata, miRcomp, mirIntegrator, miRLAB, Mirsynergy, motifStack, MSnID, multiClust, MultiMed, multiOmicsViz, MWASTools, netbenchmark, netbiov, NetSAM, nondetects, nucleoSim, OncoScore, PAA, Path2PPI, PathNet, pathview, pepXMLTab, PGA, PhenStat, Prize, proBAMr, proFIA, proteoQC, PureCN, qpgraph, quantro, QuartPAC, RBGL, rBiopaxParser, Rcade, rcellminer, rCGH, Rcpi, RCy3, RGraph2js, Rgraphviz, rgsepd, riboSeqR, ROntoTools, ropls, RTN, RTNduals, rTRM, samExploreR, sangerseqR, SANTA, sapFinder, segmentSeq, SeqArray, seqPattern, seqTools, SeqVarTools, SICtools, sigsquared, SIMAT, similaRpeak, SIMLR, SNPRelate, SpacePAC, sparseDOSSA, specL, STATegRa, STRINGdb, TCC, TIN, ToPASeq, trackViewer, traseR, TRONCO, Uniquorn |
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