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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")
In most cases, you don't need to download the package archive at all.
ChIPseqR
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Identifying Protein Binding Sites in High-Throughput Sequencing Data
Bioconductor version: Release (3.5)
ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
Author: Peter Humburg
Maintainer: Peter Humburg <peter.humburg at gmail.com>
Citation (from within R,
enter citation("ChIPseqR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPseqR")
| R Script | Introduction to ChIPseqR | |
| Reference Manual |
Details
| biocViews | ChIPSeq, Infrastructure, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (8 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0), methods, BiocGenerics, S4Vectors(>= 0.9.25) |
| Imports | Biostrings, fBasics, GenomicRanges, IRanges(>= 2.5.14), graphics, grDevices, HilbertVis, ShortRead, stats, timsac, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ChIPseqR_1.30.0.tar.gz |
| Windows Binary | ChIPseqR_1.30.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | ChIPseqR_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ChIPseqR |
| Package Short Url | http://bioconductor.org/packages/ChIPseqR/ |
| Package Downloads Report | Download Stats |
Documentation »
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