To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DirichletMultinomial")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.
Author: Martin Morgan <martin.morgan at roswellpark.org>
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
Citation (from within R,
enter citation("DirichletMultinomial")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DirichletMultinomial")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DirichletMultinomial")
R Script | An introduction to DirichletMultinomial | |
Reference Manual |
biocViews | Classification, Clustering, Metagenomics, Microbiome, Sequencing, Software |
Version | 1.18.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (5 years) |
License | LGPL-3 |
Depends | S4Vectors, IRanges |
Imports | stats4, methods, BiocGenerics |
LinkingTo | |
Suggests | lattice, parallel, MASS, RColorBrewer, xtable |
SystemRequirements | gsl |
Enhances | |
URL | |
Depends On Me | |
Imports Me | TFBSTools |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | DirichletMultinomial_1.18.0.tar.gz |
Windows Binary | DirichletMultinomial_1.18.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | DirichletMultinomial_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DirichletMultinomial |
Package Short Url | http://bioconductor.org/packages/DirichletMultinomial/ |
Package Downloads Report | Download Stats |
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