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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ENCODExplorer")
In most cases, you don't need to download the package archive at all.
ENCODExplorer
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A compilation of ENCODE metadata
Bioconductor version: Release (3.5)
This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.
Author: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Audrey Lemacon <lemacon.audrey at ulaval.ca>, Louis Gendron <louisg.212 at gmail.com> Astrid-Louise Deschenes, <astrid-louise.deschenes at crchudequebec.ulaval.ca> and Arnaud Droit <arnaud.droit at crchudequebec.ulaval.ca >
Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>
Citation (from within R,
enter citation("ENCODExplorer")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ENCODExplorer")
Documentation
| HTML | R Script | Data update |
| HTML | R Script | Database model |
| HTML | R Script | Introduction to ENCODExplorer |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 2.2.1 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3), shiny, DT, shinythemes |
| Imports | tools, jsonlite, parallel, RCurl, tidyr, data.table, dplyr, stringr, stringi |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics, knitr, curl, httr |
| SystemRequirements | |
| Enhances | |
| URL | |
| BugReports | https://github.com/CharlesJB/ENCODExplorer/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | TSRchitect |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ENCODExplorer_2.2.1.tar.gz |
| Windows Binary | ENCODExplorer_2.2.1.zip |
| Mac OS X 10.11 (El Capitan) | ENCODExplorer_2.2.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ENCODExplorer |
| Package Short Url | http://bioconductor.org/packages/ENCODExplorer/ |
| Package Downloads Report | Download Stats |
Documentation »
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