To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("IntEREst")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).
Author: Ali Oghabian <Ali.Oghabian at Helsinki.Fi>, Dario Greco <dario.greco at helsinki.fi>, Mikko Frilander <Mikko.Frilander at helsinki.fi>
Maintainer: Ali Oghabian <Ali.Oghabian at Helsinki.Fi>, Mikko Frilander <Mikko.Frilander at helsinki.fi>
Citation (from within R,
enter citation("IntEREst")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("IntEREst")
HTML | R Script | IntEREst, Intron Exon Retention Estimator |
Reference Manual |
biocViews | Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, Normalization, RNASeq, Sequencing, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
License | GPL-2 |
Depends | R (>= 3.4), GenomicRanges, Rsamtools, SummarizedExperiment, edgeR, S4Vectors |
Imports | seqLogo, Biostrings, GenomicFeatures, IRanges, seqinr, limma, graphics, grDevices, stats, utils, grid, methods, DBI, RMySQL, GenomicAlignments, BiocParallel, BiocGenerics |
LinkingTo | |
Suggests | clinfun, knitr, BSgenome.Hsapiens.UCSC.hg19 |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | IntEREst_1.0.0.tar.gz |
Windows Binary | IntEREst_1.0.0.zip |
Mac OS X 10.11 (El Capitan) | IntEREst_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/IntEREst |
Package Short Url | http://bioconductor.org/packages/IntEREst/ |
Package Downloads Report | Download Stats |
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