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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MWASTools")
In most cases, you don't need to download the package archive at all.
MWASTools
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MWASTools: an integrated pipeline to perform metabolome-wide association studies
Bioconductor version: Release (3.5)
MWAS provides a complete pipeline to perform metabolome-wide association studies. Key functionalities of the package include: quality control analysis of metabonomic data; MWAS using different association models (partial correlations; generalized linear models); model validation using non-parametric bootstrapping; visualization of MWAS results; NMR metabolite identification using STOCSY.
Author: Andrea Rodriguez-Martinez, Joram M. Posma, Rafael Ayala, Ana L. Neves, Jeremy K. Nicholson, Marc-Emmanuel Dumas
Maintainer: Andrea Rodriguez-Martinez <andrea.rodriguez-martinez13 at imperial.ac.uk>, Rafael Ayala <r.ayala14 at imperial.ac.uk>
Citation (from within R,
enter citation("MWASTools")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MWASTools")
Documentation
| HTML | R Script | MWASTools |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Cheminformatics, Lipidomics, Metabolomics, QualityControl, Software, SystemsBiology |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | CC BY-NC-ND 4.0 |
| Depends | R (>= 3.4) |
| Imports | glm2, ppcor, qvalue, car, boot, grid, ggplot2, gridExtra, igraph, SummarizedExperiment, graphics, stats, utils |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | MetaboSignal |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MWASTools_1.0.0.tar.gz |
| Windows Binary | MWASTools_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | MWASTools_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MWASTools |
| Package Short Url | http://bioconductor.org/packages/MWASTools/ |
| Package Downloads Report | Download Stats |
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