To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RCy3")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
Vizualize, analyze and explore graphs, connecting R to Cytoscape (>= 3.3.0).
Author: Tanja Muetze, Georgi Kolishovski, Paul Shannon
Maintainer: Tanja Muetze <tanja.muetze14 at alumni.imperial.ac.uk>, Georgi Kolishovski <g_kolishv at yahoo.com>, Paul Shannon <pshannon at systemsbiology.org>
Citation (from within R,
enter citation("RCy3")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RCy3")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RCy3")
R Script | RCy3 Overview | |
Reference Manual | ||
Text | README | |
Text | NEWS |
biocViews | GraphAndNetwork, Network, Software, ThirdPartyClient, Visualization |
Version | 1.6.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (2 years) |
License | Artistic-2.0 |
Depends | R (>= 3.2), graph(>= 1.48.0) |
Imports | httr, methods, RCurl, RJSONIO |
LinkingTo | |
Suggests | BiocGenerics, RUnit, knitr, igraph, RColorBrewer, paxtoolsr, rmarkdown |
SystemRequirements | Cytoscape (>= 3.3.0), CyREST (>= 3.3.7), Java (>=8) |
Enhances | |
URL | https://github.com/tmuetze/Bioconductor_RCy3_the_new_RCytoscape |
BugReports | https://github.com/tmuetze/Bioconductor_RCy3_the_new_RCytoscape/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | RCy3_1.6.0.tar.gz |
Windows Binary | RCy3_1.6.0.zip |
Mac OS X 10.11 (El Capitan) | RCy3_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RCy3 |
Package Short Url | http://bioconductor.org/packages/RCy3/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: