To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("affycoretools")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.
Author: James W. MacDonald
Maintainer: James W. MacDonald <jmacdon at u.washington.edu>
Citation (from within R,
enter citation("affycoretools")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("affycoretools")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affycoretools")
R Script | affycoretools, refactored | |
Reference Manual | ||
Text | NEWS |
biocViews | GeneExpression, Microarray, OneChannel, ReportWriting, Software |
Version | 1.48.0 |
In Bioconductor since | BioC 1.8 (R-2.3) (11.5 years) |
License | Artistic-2.0 |
Depends | Biobase, methods |
Imports | affy, limma, GOstats, gcrma, splines, xtable, AnnotationDbi, ggplot2, gplots, oligoClasses, ReportingTools, hwriter, lattice, S4Vectors, edgeR, RSQLite, BiocGenerics |
LinkingTo | |
Suggests | affydata, hgfocuscdf, BiocStyle, knitr, hgu95av2.db, rgl |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | AgiMicroRna |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | affycoretools_1.48.0.tar.gz |
Windows Binary | affycoretools_1.48.0.zip |
Mac OS X 10.11 (El Capitan) | affycoretools_1.48.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/affycoretools |
Package Short Url | http://bioconductor.org/packages/affycoretools/ |
Package Downloads Report | Download Stats |
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