To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("compEpiTools")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.
Author: Mattia Pelizzola, Kamal Kishore
Maintainer: Kamal Kishore <kamal.fartiyal84 at gmail.com>
Citation (from within R,
enter citation("compEpiTools")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("compEpiTools")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("compEpiTools")
R Script | compEpiTools.pdf | |
Reference Manual | ||
Text | NEWS |
biocViews | Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization |
Version | 1.10.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (3 years) |
License | GPL |
Depends | R (>= 3.1.1), methods, topGO, GenomicRanges |
Imports | AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb |
LinkingTo | |
Suggests | BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | compEpiTools_1.10.0.tar.gz |
Windows Binary | compEpiTools_1.10.0.zip |
Mac OS X 10.11 (El Capitan) | compEpiTools_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/compEpiTools |
Package Short Url | http://bioconductor.org/packages/compEpiTools/ |
Package Downloads Report | Download Stats |
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