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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("heatmaps")
In most cases, you don't need to download the package archive at all.
heatmaps
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Flexible Heatmaps for Functional Genomics and Sequence Features
Bioconductor version: Release (3.5)
This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.
Author: Malcolm Perry <mgperry32 at gmail.com>
Maintainer: Malcolm Perry <mgperry32 at gmail.com>
Citation (from within R,
enter citation("heatmaps")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("heatmaps")
Documentation
| HTML | R Script | Vignette Title |
| Reference Manual |
Details
| biocViews | FunctionalGenomics, SequenceMatching, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4) |
| Imports | methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, GenomeInfoDb |
| LinkingTo | |
| Suggests | BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | heatmaps_1.0.0.tar.gz |
| Windows Binary | heatmaps_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | heatmaps_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/heatmaps |
| Package Short Url | http://bioconductor.org/packages/heatmaps/ |
| Package Downloads Report | Download Stats |
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