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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("multiOmicsViz")
In most cases, you don't need to download the package archive at all.
multiOmicsViz
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Plot the effect of one omics data on other omics data along the chromosome
Bioconductor version: Release (3.5)
Calculate the spearman correlation between the source omics data and other target omics data, identify the significant correlations and plot the significant correlations on the heat map in which the x-axis and y-axis are ordered by the chromosomal location.
Author: Jing Wang <jingwang.uestc at gmail.com>
Maintainer: Jing Wang <jingwang.uestc at gmail.com>
Citation (from within R,
enter citation("multiOmicsViz")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("multiOmicsViz")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("multiOmicsViz")
| R Script | multiOmicsViz | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software, SystemsBiology, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | LGPL |
| Depends | R (>= 3.3.2) |
| Imports | methods, parallel, doParallel, foreach, grDevices, graphics, utils, SummarizedExperiment, stats |
| LinkingTo | |
| Suggests | BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | multiOmicsViz_1.0.0.tar.gz |
| Windows Binary | multiOmicsViz_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | multiOmicsViz_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/multiOmicsViz |
| Package Short Url | http://bioconductor.org/packages/multiOmicsViz/ |
| Package Downloads Report | Download Stats |
Documentation »
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