To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("scater")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control.
Author: Davis McCarthy
Maintainer: Davis McCarthy <davis at ebi.ac.uk>
Citation (from within R,
enter citation("scater")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("scater")
HTML | R Script | An introduction to the scater package |
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, DataRepresentation, DimensionReduction, GeneExpression, Infrastructure, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcriptomics, Visualization |
Version | 1.4.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.3), Biobase, ggplot2, methods |
Imports | biomaRt, BiocGenerics, data.table, dplyr, edgeR, ggbeeswarm, grid, limma, Matrix, matrixStats, parallel, plyr, reshape2, rhdf5, rjson, shiny, shinydashboard, stats, tximport, utils, viridis |
LinkingTo | |
Suggests | BiocStyle, cowplot, cluster, destiny, knitr, monocle, mvoutlier, rmarkdown, Rtsne, testthat, magrittr |
SystemRequirements | |
Enhances | |
URL | http://bioconductor.org/packages/scater/ |
BugReports | https://support.bioconductor.org/ |
Depends On Me | scran, splatter |
Imports Me | Glimma, SC3 |
Suggests Me | switchde |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | scater_1.4.0.tar.gz |
Windows Binary | scater_1.4.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | scater_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/scater |
Package Short Url | http://bioconductor.org/packages/scater/ |
Package Downloads Report | Download Stats |
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