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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sigsquared")
In most cases, you don't need to download the package archive at all.
sigsquared
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Gene signature generation for functionally validated signaling pathways
Bioconductor version: Release (3.5)
By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.
Author: UnJin Lee
Maintainer: UnJin Lee <unjin at uchicago.edu>
Citation (from within R,
enter citation("sigsquared")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sigsquared")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sigsquared")
| R Script | SigSquared | |
| Reference Manual |
Details
| biocViews | Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2.5 years) |
| License | GPL version 3 |
| Depends | R (>= 3.2.0), methods |
| Imports | Biobase, survival |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sigsquared_1.8.0.tar.gz |
| Windows Binary | sigsquared_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | sigsquared_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sigsquared |
| Package Short Url | http://bioconductor.org/packages/sigsquared/ |
| Package Downloads Report | Download Stats |
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