marray

DOI: 10.18129/B9.bioc.marray    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see marray.

Exploratory analysis for two-color spotted microarray data

Bioconductor version: 3.9

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("marray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("marray")

 

PDF	R Script	marray Normalization
PDF	R Script	marray Overview
PDF	R Script	marrayClasses Overview
PDF	R Script	marrayClasses Tutorial (short)
PDF	R Script	marrayInput Introduction
PDF	R Script	marrayPlots Overview
PDF		Reference Manual
Text		LICENSE

Details

biocViews	Microarray, Preprocessing, Software, TwoChannel
Version	1.62.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License	LGPL
Depends	R (>= 2.10.0), limma, methods
Imports
LinkingTo
Suggests	tkWidgets
SystemRequirements
Enhances
URL	http://www.maths.usyd.edu.au/u/jeany/
Depends On Me	beta7, CGHbase, convert, dyebias, dyebiasexamples, FEM, maigesPack, MineICA, nnNorm, OLIN, RBM, stepNorm, TurboNorm
Imports Me	arrayQuality, ChAMP, methylPipe, MSstats, nnNorm, OLIN, OLINgui, piano, plrs, sigaR, stepNorm, timecourse
Suggests Me	AgiMicroRna, DEGraph, Mfuzz
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	marray_1.62.0.tar.gz
Windows Binary	marray_1.62.0.zip
Mac OS X 10.11 (El Capitan)	marray_1.62.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/marray
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/marray
Package Short Url	https://bioconductor.org/packages/marray/
Package Downloads Report	Download Stats